Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs143439286 | chr19:43555291 | C/T | 0.000235 | 490 | 15.3 | 18.3 | 10.08 | KM Plot |
| THCA | rs143449053 | chr5:96208147 | A/T | 5.46E-10 | 484 | 15.15 | 20.43 | 20.6 | KM Plot |
| THCA | rs143517225 | chr16:2965026 | A/AT | 0.000127 | 482 | 15.3 | 16.65 | 16.07 | KM Plot |
| THCA | rs143534450 | chr1:41686655 | TTTAA/T | 2.8E-7 | 490 | 14.92 | 17.77 | 17.47 | KM Plot |
| THCA | rs143542026 | chr1:91692854 | G/GT | 1.01E-5 | 475 | 15.83 | 17.23 | 17.77 | KM Plot |
| THCA | rs143585475 | chr2:48094861 | TAAGTCA/T | 4.9E-8 | 490 | 15.2 | 18.9 | 8.27 | KM Plot |
| THCA | rs1436261 | chr13:102290452 | C/T | 0.000305 | 490 | 19.22 | 15.9 | 15.63 | KM Plot |
| THCA | rs143665472 | chr6:86716590 | A/G | 1.05E-8 | 474 | 15.2 | 17.3 | 17.98 | KM Plot |
| THCA | rs143830229 | chr10:81775197 | CAG/C | 0.000111 | 489 | 15.97 | 15.98 | 9.77 | KM Plot |
| THCA | rs143899048 | chr19:43562145 | A/T | 0.000237 | 489 | 15.3 | 18.93 | 10.08 | KM Plot |
| THCA | rs1439105 | chr2:196590381 | A/G | 6.56E-5 | 484 | 16.08 | 15.7 | 16.4 | KM Plot |
| THCA | rs143933759 | chr2:48073722 | A/AAT | 1.07E-7 | 487 | 15.32 | 18.33 | 8.27 | KM Plot |
| THCA | rs143954597 | chr1:41674613 | A/C | 2.8E-7 | 490 | 14.92 | 17.77 | 17.47 | KM Plot |
| THCA | rs144007305 | chr14:59858038 | CT/C | 0.000167 | 487 | 16.3 | 14.9 | 5.45 | KM Plot |
| THCA | rs144050925 | chr2:241542133 | G/A | 2.29E-11 | 482 | 15.9 | 16.25 | 19.27 | KM Plot |